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Publications

Complete list of research publications, papers, and contributions.

32 publications

2025

QuantRad: Advancing Quantitative Reliability in Radiology Report Generation with Cascaded Decoders

Jin, Ying, Codella, Noel C, ... Hwang, Jenq-Neng

arXiv arXiv:x (2025)

preprint2025
Research

LLaVA-Rad MIMIC-CXR Annotations

Chaves, Juan Manuel Zambrano, Huang, Shih-Cheng, ... et al.

arXiv arXiv:x (2025)

preprint2025
Research

Universal Abstraction: Harnessing Frontier Models to Structure Real-World Data at Scale

Wong, Cliff, Preston, Sam, ... et al.

arXiv arXiv:2502.00943 (2025)

preprint2025
Research

2024

Foundation Models for Biomedical Image Segmentation: A Survey

Lee, Ho Hin*, Gu, Yu*, ... et al.

arXiv arXiv:2401.07654 (2024)

preprint2024
Research

Training small multimodal models to bridge biomedical competency gap: A case study in radiology imaging

Chaves, Juan Manuel Zambrano, Huang, Shih-Cheng, ... et al.

CoRR (2024)

journal2024
Research

BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once

Zhao, Theodore, Gu, Yu, ... et al.

arXiv arXiv:2405.12971 (2024)

preprint2024
Research

Medimageinsight: An open-source embedding model for general domain medical imaging

Codella, Noel CF, Jin, Ying, ... et al.

arXiv arXiv:2410.06542 (2024)

preprint2024
Research

2023

Distilling large language models for biomedical knowledge extraction: A case study on adverse drug events

Gu, Yu, Zhang, Sheng, ... et al.

arXiv arXiv:2307.06439 (2023)

preprint2023
Research

Interactive Span Recommendation for Biomedical Text

Blankemeier, Louis, Zhao, Theodore, ... Preston, J

ACL - Proceedings of the 5th Clinical Natural Language Processing Workshop (2023)

conference2023
Research

Toward structuring real-world data: Deep learning for extracting oncology information from clinical text with patient-level supervision

Preston, Sam, Wei, Mu, ... et al.

Cell Press Patterns (2023)

journal2023
Research

Scaling clinical trial matching using large language models: a case study in oncology

Wong, Cliff, Zhang, Sheng, ... et al.

Machine Learning for Healthcare Conference (2023)

conference2023
Research

Kola: Carefully benchmarking world knowledge of large language models

Yu, Jifan, Wang, Xiaozhi, ... et al.

arXiv arXiv:2306.09296 (2023)

preprint2023
Research

2022

2021

Domain-specific language model pretraining for biomedical natural language processing

Gu, Yu, Tinn, Robert, ... Poon, Hoifung

ACM Transactions on Computing for Healthcare (HEALTH) (2021)

journal2021
Research

2020

Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning

Chen*, Long, Gu*, Yu, ... Huang, Yang

Journal of the American Medical Informatics Association (2020)

journal2020
Research

Clinical concept normalization with a hybrid natural language processing system combining multilevel matching and machine learning ranking

Chen, Long, Fu, Wenbo, ... Huang, Yang

Journal of the American Medical Informatics Association (2020)

journal2020
Research

Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing 2020

Gu, Y, Tinn, R, ... Poon, H

arXiv arXiv:2007.15779 (2020)

preprint2020
Research

Domain-specific language model pretraining for biomedical natural language processing. arXiv

Gu, Yu, Tinn, Robert, ... Poon, Hoifung

preprint (2020)

preprint2020
Research

2019

Clinical trial cohort selection based on multi-level rule-based natural language processing system

Chen*, Long, Gu*, Yu, ... Huang, Yang

Journal of the American Medical Informatics Association (2019)

journal2019
Research

2017

Symptom severity classification with gradient tree boosting

Liu, Yang, Gu, Yu, ... Huang, Yang

Journal of biomedical informatics (2017)

journal2017
Research